解:$(1) $由$ x+2y=5,$得$ x=-2y+5$
当$ y=1 $时,$x=3;$当$ y=2 $时,$x=1$
∴方程$ x+2 y=5 $的所有正整数解为$\{\begin{array}{l}x=3\\y=1\end{array},$$\{\begin{array}{l}x=1\\y=2\end{array}$
$(2) $联立方程组$ \{\begin{array}{l}x+2y=5\\x+y=0\end{array},$解得$ \{\begin{array}{l}x=-5\\y=5\end{array} $
把$ \{\begin{array}{l}x=-5\\y=5\end{array} $代入$ x-2y+mx+9=0,$得$ -5-10-5m+9=0,$解得$m=-\frac 65$
$(3) $解方程组$ \{\begin{array}{l}x+2y=5\\x-2y+mx+9=0\end{array}$得$ \{\begin{array}{l}x=-\frac {4}{m+2}\\y=\frac {5m+14}{2m+4}\end{array}$
当$ x=-\frac {4}{m+2} $为整数时,$m+2 $可取的值为$ \pm 1,$$\pm 2,$$\pm 4,$则
$ m $可取的值为$ -1,$$-3,$$0,$$-4,$$2,$$-6$
当$ m=-1 $时,$y=\frac {9}{2} ;$当$ m=-3 $时,$y= \frac {1}{2};$
当$ m=0 $时,$y=\frac {7}{2} ;$当$ m=-4 $时,$y=\frac {3}{2} ;$
当$ m=2 $时,$y=3 ;$当$ m=-6 $时,$y=2. $
综上所述,该方程组有整数解时,整数$ m $的值为$ 2 $或$ -6$